Chaudhary Charan Singh University Tender
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Chaudhary Charan Singh University - CCSU Tender
Other Consultancy Services
Consultancy Services
Eprocure
Opening Date7 Mar 2020
Closing Date20 Mar 2020
Tender Amount₹ 18,00,000
Costs
EMD
₹ 50,000Document Cost
₹ 1,050Tender Fee
Refer Documents
Description
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Contact
Tender Id
2020_CCSUN_444541_1Bid Award Id
ViewTender No
FC/609 Dt. 02-03-2020Tender Authority
Chaudhary Charan Singh University ViewPurchaser Address
-Website
http://https://www.ccsuniversity.ac.in/
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Documents
BOQ Items
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b. The array should contain contains 81,587 functional markers.
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c. The vendor should quote prices for the custom designing of the genotyping array (Setup cost if any).
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d. Vendor has to provide a dedicated Bioinformatics support for custom designing of the array.
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e. The time frame for the design of custom array shall be 6-8 weeks.
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f. The technology utilized should have quality control checks, genotyping calls, clustering software.
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g. The call rate must be greater than 95% for the SNPs.
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h. The chips shall be ordered in batches of 96 or multiples thereof and the price needs.
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i. Price to be quoted for individual sample services including bioinformatics.
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j. Any imputation of the variants can be done to impute missing data using BEAGLE software v4.
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k. Whole genome phylogenetics analysis should be performed using Maximum likelihood/Maximum parsimony methods (eg algorithms PhyML, RAxML, NJtree, MEGA etc.)
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l. PHASING and HAPLOTYPE analysis will be done using BEAGLE v4 followed by association analysis using PLINK software.
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m. Identity by descent (IBD) and identity by Homozygosity (IBH) Analysis can be performed using BEALGE v4.
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n. Population Structure analysis and LD analysis to be performed.
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o. Phenotype data will be provided for QTL analysis using new and powerful statistical approaches to association mapping such as a General Linear Model (GLM) and Mixed Linear Model (MLM).
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p. The sample pick up has to be arranged by the vendor.
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q. Firm should sequence wheat genotypes and analyses of the data including identification of subgenome wise SNP markers, genetic map by assigning identified markers on Wheat chromosomes.
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r. Firm should perform association mapping based on genotyping data and phenotypic data (phenotypic data will be provided by the Institute.)
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s. Should perform genetic diversity analysis.
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t. Vendor should provide post analysis bioinformatics support.
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